Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs9493447 chr6:133125900 C/T 0 502 31.47 35.2 29.05 KM Plot
THCA rs9493449 chr6:133126179 T/A 0 502 31.47 35.2 29.05 KM Plot
THCA rs9493454 chr6:133144629 G/T 1.36E-5 503 30.78 33.48 31.43 KM Plot
THCA rs951350 chr3:122477558 C/T 6.11E-6 501 20.87 26.65 31.98 KM Plot
THCA rs9577397 chr13:112608698 G/T 1.74E-5 503 31.82 31.03 30.5 KM Plot
THCA rs9587535 chr13:108882748 A/G 8.37E-6 495 31.43 31.98 26.03 KM Plot
THCA rs9587536 chr13:108895741 A/G 2.17E-6 499 31.43 32.03 24.63 KM Plot
THCA rs9587538 chr13:108905475 T/C 2.38E-6 497 31.45 31.98 24.63 KM Plot
THCA rs9608015 chr22:43731002 A/G 2.64E-6 492 31.43 32.27 23.53 KM Plot
THCA rs9608016 chr22:43731557 C/T 2.2E-6 503 31.6 32.03 23.53 KM Plot
THCA rs962785 chr9:112123487 G/A 5.13E-7 492 30.48 29.78 31.87 KM Plot
THCA rs9702123 chr10:90388890 A/G 3.04E-5 491 32.9 31.37 27.02 KM Plot
THCA rs9745474 chr16:79274530 C/T 0 500 31.5 32.27 5.8 KM Plot
THCA rs9766095 chr6:133117123 A/G 4.54E-9 500 31.47 34.45 23.53 KM Plot
THCA rs9767075 chr6:133117314 C/T 0 500 31.43 35.2 29.05 KM Plot